Publications

Preprints

• Melih Yilmaz*, William E. Fondrie*, Wout Bittremieux, Rowan Nelson, Varun Ananth, Sewoong Oh, William Stafford Noble
  Sequence-to-sequence translation from mass spectra to peptides with a transformer model
  bioRxiv, 2023.
  [Paper] / [Code].

2022

• Melih Yilmaz, William E. Fondrie, Wout Bittremieux, Sewoong Oh, William Stafford Noble
  De novo mass spectrometry peptide sequencing with a transformer model
  International Conference on Machine Learning (ICML), 2022.
  [Paper] / [Code] / [Talk]

2021

• Amee D Azad, Melih Yilmaz, Selen Bozkurt, James D Brooks, Douglas W Blayney, Tina Hernandez‐Boussard
  Diverse patient trajectories during cytotoxic chemotherapy: Capturing longitudinal patient‐reported outcomes
  Cancer Medicine, 2021.
  [Paper]